SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 3glq - http://xb.cnjournals.com/hnndzr/ch/reader/create_pdf.aspx?file_no=2016010308&fla... Biological activity on cordycepin and cordycepin triphosphate based on the reverse molecular docking 2016 Gong, Guocai , Ling et al. - (J. Hunan Agr. Un. (Nat Sci) ), 2016 - xb.cnjournals.com 12.83 3IID 8.89 2XZL 12.35 1ZOS 8.85 3LBN 12.34 3GLQ 8.75 1F2U 1QQO PDB 1 ADP Fig.1 Comparison the structure conformation
2 5dvw 3tcq http://www.worldscientific.com/doi/abs/10.1142/S1793048017500060 Interplay Among Constitutes of Ebola Virus: Nucleoprotein, Polymerase L, Viral Proteins 2017 M Zhang, P He, J Su, DT Singh, H Su - Biophysical Reviews and , 2017 - World Scientific ... interacts with the C-terminal domain of NP to stabilize the overall virion structure (shown in ... Majorfunctions of these structural proteins are elaborated in the boxes.1,10,56 (b) Crystal ... of Ebola viralproteins: NP (RCSB PDB:4ZTI)96; VP30 protein (RCSB PDB:5DVW)97; VP35 ...
3 3gvi - http://www.wjpps.com/admin/assets/article_issue/1382162610.pdf Rhizobitoxine enhances nodulation by inhibiting ethylene synthesis of bradyrhizobium elkanii from lespedeza species: validation by homology modelling and 2013 R Vijayan, P Palaniappan, SA Tongmin - World J of pharm and , 2013 - wjpps.com ... docking studies with the known inhibitor rhizobitoxine. The crystal structure of protein was taken from the Protein Data Bank (entry PDB code: 3GVI). So, we considered the active site residues predicted from the LIGSITE and CASTp has been used for binding with ...
4 3ecd - http://www.uib.no/People/nmaxt/papers/pan1.pdf Model the Solvent-Excluded Surface of 3D Protein Molecular Structures Using Geometric PDE-Based Level-Set Method 2009 Q Pan, XC Tai - Communications in Computational Physics, 2009 - uib.no ... where ? is a very small value and chosen to be O(?x). 3 Numerical implementation 3.1 Initial construction The data of the complex 3D protein molecular structures, saved as pdb format files, can be downloaded from the free website of the protein data bank: http://www.rcsb.org. ...
5 3eiz 3i4t http://www.turkjbiochem.com/2014/435-442.Ek2.pdf High pKa variability of cysteine residues in structural databases and the effect of H-bond contributions 2014 SM Marino, İ Soylu - Türk Biyokimya Dergisi [Turkish Journal of …, 2014 - turkjbiochem.com ... High pKa variability of cysteine residues in structural ... RESULTS of ppka3 on PDB-crystal datasetprot=protein name res_num=residue number H-bond=hydrogen bond contribution to pKaprediction (pKa) Coul=electrostatics (from Coulombic interactions) contribution to pKa ...
6 3k2h - http://www.theses.fr/2015STRAF059 Characterization of natural product biological imprints for computer-aided drug design applications 2015 N Sturm - 2015 - theses.fr ... Changes in sequence and structure also explain the poor similarity between SB4 inhibitor-binding sites in Mitogen-activated protein (MAP) kinase 14 and MAP kinase 1 (PDB codes: 1bl7, 3erk), and between the antifolate LYA-binding site in human and protozoan thymidylate synthases (PDB codes: 1juj, 3k2h). ...
7 3eg4 3mdx, 3qxi, 3lqw, 3laa, 3oc7 http://www.theses.fr/2015GRENM005/abes Nouvelles méthodes de calcul pour la prédiction des interactions protéine-protéine au niveau structural 2015 P Popov - 2015 - theses.fr ... au niveau structural Thèse soutenue publiquement le « 28 Janvier 2015 », devant le jury composéde : ... blue, respectively). Right: native structure of Target 58 (grey) and medium-quality model pro- ...18 2.2 Query protocols for the PDB that were used to compose the bound bench- ...
8 4k73 - http://www.theses.fr/2014PA066415 Stratégies d'optimisation des bêta-lactamines pour le traitement des infections dues aux mycobactéries multirésistantes 2014 V Dubée - 2014 - theses.fr ... 20 Tableau 3. Structures de L,D-transpeptidases inscrites dans la Protein Data Bank. ... Figure 1.Structure des classes les plus fréquemment utilisées de β-lactamines. ... accepteur. La pénicillineest un analogue structural de cette extrémité D-Ala–D-Ala, et pourrait donc former un ...
9 3gka - http://www.teses.usp.br/teses/disponiveis/76/76132/tde-24032014-151614/en.php Estudo estrutural das enzimas Topoisomerase II Mitocondrial e Old Yellow Enzyme de Trypanosoma cruzi 2014 NC Rodrigues - teses.usp.br ... resolution of 1.27 and 2.00 , respectively. The atomic coordinates and structure factors of the TcOYE structure in P212121 and P21 crystalline forms have been deposited in the Protein DataBank with the accession codes 4E2B and 4E2D, respectively. TcOYE displays a ...
10 6ape - http://www.teses.usp.br/teses/disponiveis/76/76132/tde-06062018-092525/en.php Estudos estruturais e funcionais da enzima N5, N10-metilenotetrahidrofolato-desidrogenase-ciclohidrolase de Xanthomonas albilineans aplicados descoberta de 2018 RV Bueno - 2018 - teses.usp.br The structural , kinetic, and biophysical data obtained in this PhD thesis provide the molecular basis PCR Reao em cadeia da polimerase PDB Protein Data Bank PEG Polietilenoglicol SAR Relaes estrutura-atividade SBVS Structure -Based Virtual Screening